STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC35733.1Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5. (501 aa)    
Predicted Functional Partners:
SKC35727.1
Peptidase family M49.
       0.773
SKC35740.1
Peptidase family M49.
       0.693
SKC49886.1
Hypothetical protein.
  
     0.541
SKC49861.1
Hypothetical protein.
  
     0.482
SKC35758.1
LysR family transcriptional regulator, cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
       0.481
SKC41281.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.446
SKC41271.1
Hypothetical protein.
  
     0.430
Your Current Organism:
Bacteroidales bacterium WCE2008
NCBI taxonomy Id: 1945891
Other names: B. bacterium WCE2008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.