STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKC57764.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (282 aa)    
Predicted Functional Partners:
SKC57787.1
Regulator of sigma E protease.
 
  
 0.826
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.791
SKC34588.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.758
SKC57709.1
LysM domain-containing protein.
 
 
 
0.758
SKC57793.1
Protein of unknown function.
 
     0.741
SKC57753.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.571
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.567
SKC57720.1
Phosphomannomutase.
       0.566
SKC57937.1
LysM repeat-containing protein.
 
 
 0.562
SKC60412.1
Hypothetical protein.
  
     0.518
Your Current Organism:
Bacteroidales bacterium WCE2008
NCBI taxonomy Id: 1945891
Other names: B. bacterium WCE2008
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.