STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garDD-galactarate dehydratase GarD; Region:COG2721G. (501 aa)    
Predicted Functional Partners:
kdgK
2-dehydro-3-deoxygluconokinase; Region:COG0524G.
 
  
 0.901
APG91449.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
 0.803
cbbE
Ribulose-phosphate 3-epimerase CbbE; Region:COG0036G; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.802
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
     
  0.800
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Region:COG0800G.
 
  
 0.689
dgoK
2-dehydro-3-deoxygalactonokinase; Region:COG3734G.
  
  
 0.683
APG89359.1
HTH-type transcriptional regulator YjjM; Region:COG1802K.
 
     0.671
APG89366.1
Amidohydrolase 2; Region:COG3618R.
 
   
 0.600
APG89361.1
Aldo/keto reductase; Region:COG0667R.
 
     0.577
APG90104.1
Fumarylacetoacetate hydrolase family protein; Region:COG3970R.
 
   
 0.574
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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