STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAATP-dependent helicase/nuclease subunit A; Region:COG1074L; Belongs to the helicase family. UvrD subfamily. (1189 aa)    
Predicted Functional Partners:
APG89378.1
ATP-dependent nuclease subunit B; Region:COG2887L.
 
   
 0.975
APG91659.1
Exodeoxyribonuclease V; Region:COG0507L.
  
 
 0.936
divL
Sensor protein DivL; Region:COG2205T.
 
  
 0.902
APG89380.1
Aminoglycoside phosphotransferase; Region:COG0802J.
 
   
 0.884
APG89379.1
Nucleotidyl transferase protein; Region:COG1208JM.
       0.840
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.755
APG92832.1
Outer membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.746
uvrD
DNA helicase II; Region:COG0210L.
 
  
0.722
chvG
Sensor protein ChvG; Region:COG2205T.
 
    0.713
APG92962.1
Hypothetical protein; Region:COG3820S.
  
     0.703
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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