STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89406.1Transcription elongation factor; Region:COG5321S. (174 aa)    
Predicted Functional Partners:
APG89405.1
L,D-transpeptidase; Region:COG1376M.
       0.655
APG89863.1
Phosphoesterase protein; Region:COG1407R.
  
     0.648
APG89864.1
ATP-dependent helicase; Region:COG1201L.
  
     0.634
APG90284.1
Hypothetical protein; Region:COG5349S.
  
     0.612
APG90722.1
Zinc-finger protein; Region:COG5349S.
  
   
 0.600
APG92857.1
Hypothetical protein.
  
     0.587
imuB
Protein ImuB; Region:COG0389L.
  
     0.569
APG90838.1
Hypothetical protein; Region:COG5458S.
  
     0.547
APG92957.1
Heparinase II/III-like protein; Region:COG5360S.
  
     0.533
regB
Sensor histidine kinase RegB; Region:COG0642T.
  
     0.458
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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