Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG89434.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
APG89436.1
ABC transporter; Region:COG0842V.
 
     0.922
APG89438.1
Hypothetical protein.
 
     0.909
APG89439.1
Hypothetical protein; Region:COG3391R.
 
     0.894
APG89437.1
ABC transporter ATP-binding protein YfiL; Region:COG1131V.
 
     0.884
APG89440.1
Hypothetical protein; Region:COG0683E.
 
     0.878
APG89432.1
ABC transporter substrate-binding protein; Region:COG0715P.
 
     0.841
APG89426.1
Family 3 extracellular solute-binding protein; Region:COG0834ET.
 
     0.799
cycB
Cytochrome c-553I.
 
     0.790
cycB-2
Cytochrome c-553I.
 
     0.790
APG89429.1
Hypothetical protein.
 
     0.788
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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