Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
APG89437.1ABC transporter ATP-binding protein YfiL; Region:COG1131V. (260 aa)    
Predicted Functional Partners:
APG89436.1
ABC transporter; Region:COG0842V.
 
  
 0.977
APG89439.1
Hypothetical protein; Region:COG3391R.
 
  
 0.921
APG89438.1
Hypothetical protein.
 
    0.910
APG89440.1
Hypothetical protein; Region:COG0683E.
 
    0.910
APG89434.1
Hypothetical protein.
 
     0.884
APG89432.1
ABC transporter substrate-binding protein; Region:COG0715P.
 
  
 0.846
APG89431.1
Binding-protein-dependent transport system inner membrane protein.
 
     0.815
ssuB
Aliphatic sulfonates transporter ATP-binding protein SsuB; Region:COG1116P.
 
     0.775
xoxF
Dehydrogenase XoxF; Region:COG4993G.
  
    0.762
APG89426.1
Family 3 extracellular solute-binding protein; Region:COG0834ET.
 
     0.741
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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