Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tadEPilus assembly protein contains TadE domain; Region:COG4961UW. (191 aa)    
Predicted Functional Partners:
tadG
Flp pilus assembly protein TadG; Region:COG4961UW.
 
     0.962
pilQ
Component of type IV pilus PilQ.
 
  
 0.898
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
    0.884
cpaE-3
CpaE2 pilus assembly protein; Region:COG2197TK.
 
    0.845
capA
Type IV prepilin peptidase CpaA; Region:COG4960OT.
 
  
 0.843
APG89461.1
Flp pilus assembly protein, pilin Flp; Region:COG3847UW.
 
    0.816
cpaD
Pilus assembly protein CpaD; Region:COG5461W.
 
     0.813
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
    0.811
cpaA-2
Pilus assembly protein CpaA; Region:COG4960OT.
 
  
 0.804
APG89550.1
Flp pilus assembly protein TadD, contains TPR repeat; Region:COG5010UW.
 
  
 0.788
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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