STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capAType IV prepilin peptidase CpaA; Region:COG4960OT. (170 aa)    
Predicted Functional Partners:
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.933
cpaC
Pilus assembly protein CpaC, contains signal peptide; Region:COG4964UW; Belongs to the bacterial secretin family.
 
  
 0.923
APG89461.1
Flp pilus assembly protein, pilin Flp; Region:COG3847UW.
 
  
 0.921
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
  
 0.902
pilQ
Component of type IV pilus PilQ.
 
  
 0.897
tadG
Flp pilus assembly protein TadG; Region:COG4961UW.
 
  
 0.863
cpaD
Pilus assembly protein CpaD; Region:COG5461W.
 
     0.855
cpaE-3
CpaE2 pilus assembly protein; Region:COG2197TK.
 
  
 0.847
tadE
Pilus assembly protein contains TadE domain; Region:COG4961UW.
 
  
 0.843
tadB
Type II/IV secretion system protein TadB, Flp pilus assembly protein TadB; Region:COG4965UW.
 
  
 0.843
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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