STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaCPilus assembly protein CpaC, contains signal peptide; Region:COG4964UW; Belongs to the bacterial secretin family. (514 aa)    
Predicted Functional Partners:
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.971
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
  
 0.928
cpaF
Pilus assembly protein ATPase CpaF; Region:COG4962UW.
 
  
 0.903
cpaB-3
Flp pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.902
tadC
Components of type IV pilus TadC; Region:COG2064W.
 
  
 0.901
cpaB-2
CpaB pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.897
capA
Type IV prepilin peptidase CpaA; Region:COG4960OT.
 
  
 0.893
tadB
Type II/IV secretion system protein TadB, Flp pilus assembly protein TadB; Region:COG4965UW.
 
  
 0.882
tadC-3
Components of type IV pilus TadC; Region:COG2064W.
 
  
 0.849
cpaD
Pilus assembly protein CpaD; Region:COG5461W.
 
   
 0.847
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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