Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cpaDPilus assembly protein CpaD; Region:COG5461W. (217 aa)    
Predicted Functional Partners:
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
     0.923
capA
Type IV prepilin peptidase CpaA; Region:COG4960OT.
 
     0.855
cpaC
Pilus assembly protein CpaC, contains signal peptide; Region:COG4964UW; Belongs to the bacterial secretin family.
 
   
 0.850
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
     0.832
APG89550.1
Flp pilus assembly protein TadD, contains TPR repeat; Region:COG5010UW.
 
   
 0.815
tadE
Pilus assembly protein contains TadE domain; Region:COG4961UW.
 
     0.813
pilQ
Component of type IV pilus PilQ.
 
     0.812
tadG
Flp pilus assembly protein TadG; Region:COG4961UW.
 
     0.809
cpaA-2
Pilus assembly protein CpaA; Region:COG4960OT.
 
     0.778
APG90843.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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