Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tadBType II/IV secretion system protein TadB, Flp pilus assembly protein TadB; Region:COG4965UW. (336 aa)    
Predicted Functional Partners:
tadC
Components of type IV pilus TadC; Region:COG2064W.
 
  
 0.984
cpaE
Pilus assembly protein CpaE; Region:COG4963UW.
 
  
 0.959
cpaF
Pilus assembly protein ATPase CpaF; Region:COG4962UW.
 
  
 0.958
cpaB
Pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.940
tadC-2
Components of type IV pilus TadC.
 
  
 0.933
tadC-3
Components of type IV pilus TadC; Region:COG2064W.
 
  
 0.933
cpaE-3
CpaE2 pilus assembly protein; Region:COG2197TK.
 
  
 0.920
cpaB-3
Flp pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.913
cpaB-2
CpaB pilus assembly protein CpaB; Region:COG3745UW.
 
  
 0.912
cpaC
Pilus assembly protein CpaC, contains signal peptide; Region:COG4964UW; Belongs to the bacterial secretin family.
 
  
 0.905
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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