Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG89547.1NlpC/P60 family protein; Region:COG0791M. (283 aa)    
Predicted Functional Partners:
APG89548.1
MarR family transcriptional regulator; Region:COG1846K.
       0.840
ftsX
Cell division protein FtsX; Region:COG2177D.
 
 
 
 0.840
ctpA
Carboxy-terminal-processing protease CtpA; Region:COG0793O; Belongs to the peptidase S41A family.
    
 
 0.754
APG92543.1
O-linked GlcNAc transferase; Region:COG0457R.
   
 
 0.749
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.737
APG90971.1
Lipoprotein YgeR; Region:COG1388M.
 
  
 0.668
pepA
Cytosol aminopeptidase PepA; Region:COG0260E; Belongs to the peptidase M17 family.
     
 0.643
APG89550.1
Flp pilus assembly protein TadD, contains TPR repeat; Region:COG5010UW.
  
   0.570
APG91165.1
Phage protein.
  
  
 0.563
APG91161.1
Hypothetical protein.
  
    0.546
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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