STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphAAcetylpolyamine aminohydrolase AphA; Region:COG0123BQ. (341 aa)    
Predicted Functional Partners:
APG92201.1
Amine oxidase; Region:COG1231E.
   
 0.893
APG91873.1
Retron-type RNA-directed DNA polymerase; Region:COG0553KL.
   
 0.875
APG91970.1
Hypothetical protein; Region:COG0464MDT.
   
 0.743
APG91332.1
Kinesin-like protein; Region:COG1196D.
    
 0.737
APG92559.1
WD-40 repeat-containing protein; Region:COG2319R.
    
 0.737
APG89858.1
Peptidoglycan-binding protein.
  
 0.549
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 0.485
APG91583.1
Inosine-5'-monophosphate dehydrogenase GuaB; Region:COG0517T.
  
  
 0.484
ghrA
Glyoxylate/hydroxypyruvate reductase A; Region:COG0111HR.
   
 0.479
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
   
 0.473
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.