STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89595.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
APG89836.1
GcrA cell cycle regulator; Region:COG5352S.
  
     0.617
hisS
histidine--tRNA ligase HisS; Region:COG0124J.
  
     0.598
APG90913.1
Zinc-finger domain protein; Region:COG4391S.
  
     0.584
fliJ
Flagellar protein FliJ.
  
     0.578
APG90842.1
Transglutaminase; Region:COG3672O.
  
     0.523
APG92302.1
Hypothetical protein.
  
     0.519
dcd
2'-deoxycytidine 5'-triphosphate deaminase protein Dcd; Region:COG0717F.
  
     0.517
APG90485.1
Hypothetical protein.
  
     0.501
aroA
3-phosphoshikimate 1-carboxyvinyltransferase AroA; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.488
APG89605.1
Transglutaminase family protein cysteine peptidase, BTLCP; Region:COG3672O.
  
     0.465
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.