STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89684.1AraC family transcriptional regulator; Region:COG2207K. (263 aa)    
Predicted Functional Partners:
APG89913.1
AraC family transcriptional regulator; Region:COG4977K.
 
   0.619
APG89683.1
Transmembrane protein; Region:COG0697GER.
       0.563
APG89682.1
Hypothetical protein; Region:COG3382R.
       0.555
APG89685.1
XRE family transcriptional regulator; Region:COG1396K.
  
    0.543
APG92593.1
AraC family transcriptional regulator; Region:COG2207K.
 
     0.543
APG92325.1
HTH-type transcriptional regulator YqhC; Region:COG2207K.
  
     0.520
APG91309.1
Transcriptional regulator, AraC type.
  
     0.448
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.446
APG91862.1
Hypothetical protein; Region:COG1917R.
  
     0.439
APG89697.1
AraC family transcriptional regulator; Region:COG2207K.
  
     0.434
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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