STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89690.1Thiamine pyrophosphate domain-containing protein; Region:COG3962G; Belongs to the TPP enzyme family. (617 aa)    
Predicted Functional Partners:
iolB
5-deoxy-glucuronate isomerase IolB; Region:COG3718G.
 
 
 0.999
iolE
Inosose dehydratase IolE; Region:COG1082G.
 
 
 0.997
iolC
5-dehydro-2-deoxygluconokinase IolC; Region:COG0524G.
 
  
 0.983
APG89693.1
Oxidoreductase domain-containing protein; Region:COG0673R.
 
  
 0.917
idhA
Inositol 2-dehydrogenase IdhA; Region:COG0673R.
 
  
 0.911
APG89692.1
Transcriptional regulator; Region:COG1737K.
 
   
 0.833
APG91176.1
Hypothetical protein; Region:COG1082G.
 
  
 0.807
APG91439.1
Sugar phosphate isomerase/epimerase; Region:COG1082G.
  
  
 0.775
APG92584.1
Endonuclease; Region:COG1082G.
  
  
 0.775
afr
1,5-anhydro-D-fructose reductase; Region:COG0673R.
 
  
 0.717
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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