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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89756.1Hypothetical protein; Region:COG5568S. (85 aa)    
Predicted Functional Partners:
APG90856.1
Hypothetical protein.
  
     0.773
fliJ
Flagellar protein FliJ.
  
     0.765
APG90913.1
Zinc-finger domain protein; Region:COG4391S.
  
     0.759
APG90443.1
Outer membrane protein y4fJ precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.753
APG92476.1
Integral membrane protein; Region:COG5480S.
  
     0.752
APG92399.1
Transmembrane protein.
  
     0.747
APG89726.1
Hypothetical protein; Region:COG5375S.
  
     0.741
APG90276.1
Invasion associated locus B; Region:COG5342R.
  
     0.738
APG90392.1
Hypothetical protein; Region:COG5447S.
  
     0.732
ropB
Outer membrane protein RopB; Region:COG3637M.
  
     0.732
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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