Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APG89820.1 | APG89822.1 | SAMCFNEI73_Ch0489 | SAMCFNEI73_Ch0491 | Transmembrane protein; Region:COG0628R. | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | 0.563 |
APG89820.1 | APG89824.1 | SAMCFNEI73_Ch0489 | SAMCFNEI73_Ch0493 | Transmembrane protein; Region:COG0628R. | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | 0.490 |
APG89820.1 | kdpD | SAMCFNEI73_Ch0489 | SAMCFNEI73_Ch0490 | Transmembrane protein; Region:COG0628R. | Sensor protein KdpD; Region:COG2205T. | 0.622 |
APG89820.1 | plsC-2 | SAMCFNEI73_Ch0489 | SAMCFNEI73_Ch0492 | Transmembrane protein; Region:COG0628R. | 1-acyl-sn-glycerol-3-phosphate acyltransferase; Region:COG0204I. | 0.484 |
APG89822.1 | APG89820.1 | SAMCFNEI73_Ch0491 | SAMCFNEI73_Ch0489 | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | Transmembrane protein; Region:COG0628R. | 0.563 |
APG89822.1 | APG89824.1 | SAMCFNEI73_Ch0491 | SAMCFNEI73_Ch0493 | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | 0.984 |
APG89822.1 | kdpD | SAMCFNEI73_Ch0491 | SAMCFNEI73_Ch0490 | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | Sensor protein KdpD; Region:COG2205T. | 0.656 |
APG89822.1 | plsC-2 | SAMCFNEI73_Ch0491 | SAMCFNEI73_Ch0492 | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | 1-acyl-sn-glycerol-3-phosphate acyltransferase; Region:COG0204I. | 0.963 |
APG89824.1 | APG89820.1 | SAMCFNEI73_Ch0493 | SAMCFNEI73_Ch0489 | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | Transmembrane protein; Region:COG0628R. | 0.490 |
APG89824.1 | APG89822.1 | SAMCFNEI73_Ch0493 | SAMCFNEI73_Ch0491 | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | CDP-alcohol phosphatidyltransferase; Region:COG0558I. | 0.984 |
APG89824.1 | kdpD | SAMCFNEI73_Ch0493 | SAMCFNEI73_Ch0490 | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | Sensor protein KdpD; Region:COG2205T. | 0.643 |
APG89824.1 | plsC-2 | SAMCFNEI73_Ch0493 | SAMCFNEI73_Ch0492 | Phosphatidate cytidylyltransferase; Region:COG4589R; Belongs to the CDS family. | 1-acyl-sn-glycerol-3-phosphate acyltransferase; Region:COG0204I. | 0.988 |
ctrA-2 | cya-21 | SAMCFNEI73_Ch3124 | SAMCFNEI73_Ch3115 | Cell cycle response regulator CtrA; Region:COG0745TK. | Adenylate cyclase; Region:COG2114T. | 0.718 |
ctrA-2 | kdpD | SAMCFNEI73_Ch3124 | SAMCFNEI73_Ch0490 | Cell cycle response regulator CtrA; Region:COG0745TK. | Sensor protein KdpD; Region:COG2205T. | 0.475 |
ctrA-2 | pleC | SAMCFNEI73_Ch3124 | SAMCFNEI73_Ch0545 | Cell cycle response regulator CtrA; Region:COG0745TK. | Non-motile and phage-resistance protein PleC; Region:COG0591E. | 0.734 |
ctrA-2 | rpfC | SAMCFNEI73_Ch3124 | SAMCFNEI73_Ch0402 | Cell cycle response regulator CtrA; Region:COG0745TK. | Sensory/regulatory protein RpfC; Region:COG0745TK. | 0.607 |
cusR | cya-21 | SAMCFNEI73_Ch1095 | SAMCFNEI73_Ch3115 | Transcriptional regulatory protein CusR; Region:COG0745TK. | Adenylate cyclase; Region:COG2114T. | 0.718 |
cusR | kdpD | SAMCFNEI73_Ch1095 | SAMCFNEI73_Ch0490 | Transcriptional regulatory protein CusR; Region:COG0745TK. | Sensor protein KdpD; Region:COG2205T. | 0.472 |
cusR | pleC | SAMCFNEI73_Ch1095 | SAMCFNEI73_Ch0545 | Transcriptional regulatory protein CusR; Region:COG0745TK. | Non-motile and phage-resistance protein PleC; Region:COG0591E. | 0.773 |
cusR | rpfC | SAMCFNEI73_Ch1095 | SAMCFNEI73_Ch0402 | Transcriptional regulatory protein CusR; Region:COG0745TK. | Sensory/regulatory protein RpfC; Region:COG0745TK. | 0.514 |
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