Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APG89847.1Hypothetical protein; Region:COG3793P. (136 aa)    
Predicted Functional Partners:
APG89848.1
Succinoglycan biosynthesis protein; Region:COG1525L.
 
     0.899
APG89849.1
Phage repressor protein C; Region:COG2932X; Belongs to the peptidase S24 family.
       0.800
APG89846.1
Transmembrane protein; Region:COG3000I.
       0.550
APG90452.1
Hypothetical protein; Region:COG3216S.
  
     0.542
uspA
Universal stress protein UspA; Region:COG0589T.
  
     0.533
APG91753.1
DnaJ family molecular chaperone; Region:COG1076O.
  
     0.521
APG90587.1
Transcriptional regulator, MarR family; Region:COG1846K.
  
     0.488
APG92848.1
Hypothetical protein; Region:COG5342R.
  
     0.464
APG89861.1
Transmembrane protein.
  
     0.462
APG89850.1
Transcriptional regulator protein, HxlR family; Region:COG1733K.
       0.458
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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