STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occMOctopine transport system permease protein OccM; Region:COG4160E. (274 aa)    
Predicted Functional Partners:
hisQ
Histidine transport system permease HisQ; Region:COG4215E.
 
 
0.936
aotP
Arginine/ornithine transport ATP-binding protein AotP; Region:COG4598E.
  
 0.931
APG89883.1
ABC transporter, periplasmic amino acid-binding protein; Region:COG0834ET.
 
  
 0.910
APG92907.1
Extracellular solute-binding protein, family 3; Region:COG0834ET; Belongs to the bacterial solute-binding protein 3 family.
  
 0.848
hisJ
Histidine-binding periplasmic protein HisJ; Region:COG0834ET; Belongs to the bacterial solute-binding protein 3 family.
  
 0.807
hipO
Hippurate hydrolase HipO; Region:COG1473R.
       0.782
tcyC
L-cystine import ATP-binding protein TcyC; Region:COG1126E.
  
 0.758
APG89845.1
Extracellular amino acid solute-binding protein; Region:COG0834ET.
 
  
 0.755
aapP
General L-amino acid transport ATP-binding protein AapP; Region:COG1126E.
  
 0.680
APG92208.1
Glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein; Region:COG1126E.
  
 0.678
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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