Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
hisQHistidine transport system permease HisQ; Region:COG4215E. (241 aa)    
Predicted Functional Partners:
aotP
Arginine/ornithine transport ATP-binding protein AotP; Region:COG4598E.
 
  
 0.960
occM
Octopine transport system permease protein OccM; Region:COG4160E.
 
 
0.941
APG89883.1
ABC transporter, periplasmic amino acid-binding protein; Region:COG0834ET.
 
 
 0.920
APG92907.1
Extracellular solute-binding protein, family 3; Region:COG0834ET; Belongs to the bacterial solute-binding protein 3 family.
 
 0.816
hisJ
Histidine-binding periplasmic protein HisJ; Region:COG0834ET; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.813
nocM
Nopaline transport system permease protein NocM; Region:COG4160E.
 
 
0.790
APG89845.1
Extracellular amino acid solute-binding protein; Region:COG0834ET.
 
 
 0.788
hipO
Hippurate hydrolase HipO; Region:COG1473R.
       0.782
tcyC
L-cystine import ATP-binding protein TcyC; Region:COG1126E.
 
  
 0.755
hisJ-2
Histidine-binding protein HisJ; Region:COG0834ET.
 
 
 0.710
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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