STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kpsSCapsule polysaccharide export protein KpsS; Region:COG3562M. (442 aa)    
Predicted Functional Partners:
rkpI
Capsular polysaccharide biosynthesis protein RkpI; Region:COG1368M.
 
   
 0.901
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
 
     0.850
ctrA
Capsule polysaccharide export outer membrane protein CtrA; Region:COG1596M.
 
   
 0.803
rkpH
Short-chain dehydrogenase/reductase RkpH; Region:COG1028IQR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.618
bioF
8-amino-7-oxononanoate synthase/2-amino-3-ketobutyrate coenzyme A ligase; Region:COG0156H.
 
     0.571
flgF-2
Flagellar basal-body rod protein FlgF; Region:COG4786N; Belongs to the flagella basal body rod proteins family.
    
   0.523
APG89892.1
Phosphosugar isomerase; Region:COG0517T; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.476
APG91143.1
Hypothetical protein; Region:COG3566S.
  
     0.424
APG91139.1
Bacteriophage protein.
  
     0.417
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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