STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rkpICapsular polysaccharide biosynthesis protein RkpI; Region:COG1368M. (531 aa)    
Predicted Functional Partners:
kpsS
Capsule polysaccharide export protein KpsS; Region:COG3562M.
 
   
 0.901
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
 
   
 0.821
APG91143.1
Hypothetical protein; Region:COG3566S.
  
     0.752
APG91592.1
Hypothetical protein.
  
     0.739
APG91139.1
Bacteriophage protein.
  
     0.735
APG92643.1
Hypothetical protein; Region:COG0457R.
 
    0.718
APG91130.1
Primosomal protein I.
  
     0.703
rkpH
Short-chain dehydrogenase/reductase RkpH; Region:COG1028IQR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.688
APG91568.1
Hypothetical protein; Region:COG0593L.
  
     0.666
APG91773.1
Hypothetical protein; Region:COG2017G.
  
     0.660
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.