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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpG-2Penicillin-binding protein 2D. (754 aa)    
Predicted Functional Partners:
mrcA
Penicillin binding peptidoglycan synthetase protein; Region:COG5009M.
 
 
0.941
dacC
D-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family.
  
 
 0.921
pbpF
Penicillin-binding protein 1F; Region:COG0744M.
  
  
 
0.918
pbpG
Penicillin-binding protein 2D; Region:COG0744M.
  
  
 
0.916
dacD
D-alanyl-D-alanine carboxypeptidase; Region:COG1686M; Belongs to the peptidase S11 family.
   
 
 0.906
penA
Penicillin-binding protein 2; Region:COG0768DM.
 
 
 
 0.796
ftsW
Lipid II flippase FtsW; Region:COG0772D; Belongs to the SEDS family.
 
 
 
 0.706
APG90971.1
Lipoprotein YgeR; Region:COG1388M.
 
  
 0.633
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.632
APG91205.1
Metalloprotease YebA; Region:COG0739M.
  
   
 0.612
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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