STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89919.1Peptidase S8 and S53 subtilisin kexin sedolisin; Region:COG1404O. (458 aa)    
Predicted Functional Partners:
APG89921.1
Transmembrane anti-sigma factor; Region:COG5662K.
 
   
 0.887
APG89920.1
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.753
secY
Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.490
pleC
Non-motile and phage-resistance protein PleC; Region:COG0591E.
 
  
 0.480
APG91088.1
T1SS secreted agglutinin RTX.
  
 
 0.478
motC
Chemotaxis protein MotC.
  
 
 0.472
APG91543.1
Phage tail fiber protein.
  
 
 0.472
APG91592.1
Hypothetical protein.
  
 
 0.472
APG91859.1
Hypothetical protein.
  
 
 0.472
APG92338.1
Hypothetical protein.
  
 
 0.472
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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