STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89921.1Transmembrane anti-sigma factor; Region:COG5662K. (263 aa)    
Predicted Functional Partners:
APG89920.1
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.924
APG89919.1
Peptidase S8 and S53 subtilisin kexin sedolisin; Region:COG1404O.
 
   
 0.887
APG89923.1
Hypothetical protein.
 
     0.760
APG91461.1
Hypothetical protein; Region:COG3829KT.
  
     0.616
rpoE
ECF subfamily RNA polymerase sigma-24 subunit; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.574
phyR
Phyllosphere-induced regulator PhyR; Region:COG0784T.
  
 
 0.550
phyR-2
Phyllosphere-induced regulator PhyR; Region:COG0784T.
  
 
 0.550
APG90737.1
N-acetylglutamate synthase; Region:COG0456J.
  
     0.549
APG91663.1
ECF family sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.509
sig
RNA polymerase sigma factor; Region:COG1595K; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.509
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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