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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG89957.1Short chain dehydrogenase; Region:COG1028IQR. (699 aa)    
Predicted Functional Partners:
APG89956.1
L-rhamnose isomerase; Region:COG4952M.
 
     0.952
ulaR
HTH-type transcriptional regulator UlaR; Region:COG1349KG.
 
  
 0.920
APG89964.1
Carbohydrate kinase contains FGGY family domain; Region:COG1070G.
 
  
 0.898
rhaM
L-rhamnose mutarotase RhaM; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.889
lsrB
Autoinducer 2-binding protein LsrB; Region:COG1879G.
 
   
 0.846
rbsC-3
Ribose transport system permease RbsC; Region:COG1172G; Belongs to the binding-protein-dependent transport system permease family.
 
    0.714
rhaP
ABC transporter monosaccharide permease; Region:COG1172G; Belongs to the binding-protein-dependent transport system permease family.
 
    0.672
betC
Choline-sulfatase BetC; Region:COG3119P.
  
 
 0.588
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
  
 
 0.571
rbsA-3
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.489
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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