Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APG89957.1Short chain dehydrogenase; Region:COG1028IQR. (699 aa)    
Predicted Functional Partners:
APG89956.1
L-rhamnose isomerase; Region:COG4952M.
 
   
 0.960
ulaR
HTH-type transcriptional regulator UlaR; Region:COG1349KG.
 
   
 0.900
APG89964.1
Carbohydrate kinase contains FGGY family domain; Region:COG1070G.
 
   
 0.875
rhaM
L-rhamnose mutarotase RhaM; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.864
lsrB
Autoinducer 2-binding protein LsrB; Region:COG1879G.
 
   
 0.847
rbsC-3
Ribose transport system permease RbsC; Region:COG1172G; Belongs to the binding-protein-dependent transport system permease family.
 
    0.713
rhaP
ABC transporter monosaccharide permease; Region:COG1172G; Belongs to the binding-protein-dependent transport system permease family.
 
    0.671
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
  
 
 0.652
rbsA-3
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.484
APG89955.1
Transglycosylase; Region:COG2261R.
  
    0.461
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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