Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
motCChemotaxis protein MotC. (446 aa)    
Predicted Functional Partners:
motB
Chemotaxis protein motility protein B; Region:COG1360N.
 
   
 0.969
motD
Chemotaxis protein MotD; Region:COG3144N.
 
     0.961
APG90007.1
Lytic transglycosylase-like protein, catalytic; Region:COG0741M.
 
     0.954
ftcR
Flagellar transcriptional regulator FtcR; Region:COG0745TK.
 
   
 0.882
flgL
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 
 0.872
flbT
Flagellum biosynthesis repressor protein FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation.
 
   
 0.854
APG90003.1
Hypothetical protein.
       0.840
flaF
Flagellar protein FlaF; Region:COG5442N.
 
     0.838
flaC-3
Flagellin C; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
 
 
 0.832
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.826
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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