STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stcD-2N-methylproline demethylase StcD; Region:COG0446I. (678 aa)    
Predicted Functional Partners:
APG90060.1
Dioxygenase reductase subunit; Region:COG1018C.
 
 
 0.911
hcr
NADH oxidoreductase Hcr; Region:COG1018C.
 
 
 0.907
APG90072.1
Transcriptional regulator TetR family protein; Region:COG1309K.
 
  
 0.889
etfB
Electron transfer flavoprotein subunit beta; Region:COG2086C.
  
 
 0.827
trxA
Thioredoxin; Region:COG3118O; Belongs to the thioredoxin family.
  
 
 0.822
APG92811.1
Thioredoxin; Region:COG3118O.
  
 
 0.822
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.811
tlpA
Thiol:disulfide interchange protein TlpA; Region:COG0526O.
  
 
 0.801
cycY
Thiol:disulfide interchange protein CycY; Region:COG0526O.
  
 
 0.801
APG90059.1
Aromatic-ring hydroxylating dioxygenase, alpha-subunit; Region:COG4638PR.
 
  
 0.775
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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