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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rirAIron-responsive transcriptional regulator; Region:COG1959K. (165 aa)    
Predicted Functional Partners:
nifS
Cysteine desulfurase NifS; Region:COG1104E.
  
  
 0.830
nifU-2
Nitrogen-fixing NifU-like protein; Region:COG0822O.
  
  
 0.628
futA
Iron uptake protein A1; Region:COG1840P.
  
  
 0.552
dppA
Periplasmic dipeptide transport protein DppA; Region:COG0747E.
       0.529
APG90085.1
Dipeptide-binding ABC transporter, periplasmic substrate-binding component.
       0.528
napF
Ferredoxin-type protein napF.
  
  
 0.512
fixN
Cytochrome c oxidase subunit 1; Region:COG3278C; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.483
fixQ
Cbb3-type cytochrome oxidase.
 
    0.477
APG91753.1
DnaJ family molecular chaperone; Region:COG1076O.
  
  
 0.477
APG90060.1
Dioxygenase reductase subunit; Region:COG1018C.
  
  
 0.462
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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