Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dppCDipeptide transport system permease DppC; Region:COG1173EP. (302 aa)    
Predicted Functional Partners:
dppD
Dipeptide transport ATP-binding protein DppD; Region:COG4172Q.
 0.999
dppB
Dipeptide transport system permease DppB; Region:COG0601EP.
 0.998
dppF
Dipeptide transport ATP-binding protein DppF; Region:COG4608E; Belongs to the ABC transporter superfamily.
 0.998
dppA
Periplasmic dipeptide transport protein DppA; Region:COG0747E.
 
 0.994
oppD
Oligopeptide transport ATP-binding protein OppD; Region:COG0444EP.
 
 0.985
dppB-2
Dipeptide transport system permease DppB; Region:COG0601EP.
 
 0.972
gsiC
Glutathione transport system permease GsiC; Region:COG0601EP.
 
 0.971
gsiA
Glutathione import ATP-binding protein GsiA; Region:COG4172Q; Belongs to the ABC transporter superfamily.
 
 0.938
oppF
Oligopeptide transport ATP-binding protein YkfD; Region:COG1124EP.
  
 0.933
APG89545.1
ABC transporter ATP-binding protein YejF; Region:COG4172Q; Belongs to the ABC transporter superfamily.
  
 0.924
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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