STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDDipeptide transport ATP-binding protein DppD; Region:COG4172Q. (284 aa)    
Predicted Functional Partners:
dppC
Dipeptide transport system permease DppC; Region:COG1173EP.
 0.999
dppB
Dipeptide transport system permease DppB; Region:COG0601EP.
 
 0.996
dppC-3
Dipeptide transport system permease DppC; Region:COG1173EP.
 
 0.993
dppF
Dipeptide transport ATP-binding protein DppF; Region:COG4608E; Belongs to the ABC transporter superfamily.
 
 
0.986
dppC-2
Dipeptide transport system permease DppC; Region:COG1173EP.
 
 0.981
dppA
Periplasmic dipeptide transport protein DppA; Region:COG0747E.
 
 0.980
dppB-2
Dipeptide transport system permease DppB; Region:COG0601EP.
 
 
 0.939
gsiC
Glutathione transport system permease GsiC; Region:COG0601EP.
 
 
 0.935
potA-2
Spermidine/putrescine import ATP-binding protein PotA; Region:COG3839G.
 
     
0.747
ddpA
D,D-dipeptide-binding periplasmic protein DdpA; Region:COG0747E.
 
 
 0.688
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.