Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phyRPhyllosphere-induced regulator PhyR; Region:COG0784T. (265 aa)    
Predicted Functional Partners:
cheR
Chemotaxis protein methyltransferase CheR; Region:COG1352NT.
 
 
 0.933
APG90096.1
Hypothetical protein.
   
   0.907
APG91315.1
Blue-light-activated protein; Region:COG0784T.
  
 
 0.901
pleC
Non-motile and phage-resistance protein PleC; Region:COG0591E.
  
 
 0.889
APG92074.1
Blue-light-activated histidine kinase; Region:COG2203T.
 
 
 0.882
fliM
Flagellar motor switch protein FliM; Region:COG1868N.
  
 
 0.880
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ; Region:COG0745TK.
  
 
 0.865
fliG
Flagellar motor switch protein FliG; Region:COG1536N.
  
 
 0.848
fliE
Flagellar hook-basal body complex protein FliE; Region:COG1677N.
  
 
 0.848
APG92077.1
Hypothetical protein.
   
   0.825
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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