STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgdRHTH-type transcriptional regulator DgdR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family. (316 aa)    
Predicted Functional Partners:
gcvA-3
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.619
oxyR
Hydrogen peroxide-inducible activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
 
    
0.606
gcvA
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.605
APG90760.1
LysR family transcriptional regulator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.595
APG89771.1
HTH-type transcriptional regulator YhjC; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.593
APG92524.1
HTH-type transcriptional regulator YafC; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.578
gbpR
HTH-type transcriptional regulator GbpR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.566
APG90125.1
Hypothetical protein; Region:COG5457S.
       0.523
gcvA-5
Glycine cleavage system transcriptional activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.501
aaeR
HTH-type transcriptional activator AaeR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.448
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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