STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttdRHTH-type transcriptional activator TtdR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
dgdR-3
HTH-type transcriptional regulator DgdR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.694
oxyR
Hydrogen peroxide-inducible activator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.671
pecT
HTH-type transcriptional regulator PecT; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.628
APG91823.1
LysR family transcriptional regulator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.557
APG92202.1
RuBisCO transcriptional regulator; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.525
glcD
Glycolate oxidase subunit GlcD; Region:COG0277C.
       0.467
glcE
Glycolate oxidase subunit GlcE; Region:COG0277C.
       0.467
gbpR
HTH-type transcriptional regulator GbpR; Region:COG0583K; Belongs to the LysR transcriptional regulatory family.
  
     0.410
gltB-2
Ferredoxin-dependent glutamate synthase 1; Region:COG0067E.
  
  
 0.407
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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