Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APG90206.1Hypothetical protein. (73 aa)    
Predicted Functional Partners:
APG90207.1
tRNA (adenine37-N(6))-methyltransferase; Region:COG4123J; Belongs to the methyltransferase superfamily.
       0.840
nhaA
Na(+)/H(+) antiporter NhaA; Region:COG0616O.
 
     0.729
ispB
Octaprenyl-diphosphate synthase IspB; Region:COG0142H; Belongs to the FPP/GGPP synthase family.
       0.676
APG90838.1
Hypothetical protein; Region:COG5458S.
  
     0.635
APG92286.1
Transmembrane protein; Region:COG3705E.
 
     0.634
APG91944.1
Transmembrane protein.
  
     0.628
APG89906.1
Hypothetical protein.
  
     0.611
APG91945.1
Transmembrane protein; Region:COG1572O.
  
     0.608
rsmI
Ribosomal RNA small subunit methyltransferase I; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.558
APG90209.1
Hypothetical protein; Region:COG1585O.
       0.550
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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