STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG90213.1Membrane protein. (645 aa)    
Predicted Functional Partners:
lemA
Protein LemA; Region:COG1704S.
 
     0.934
phoU
Phosphate transport system protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.599
mosC
Membrane protein MosC; Region:COG0738G.
   
    0.597
glyS
glycine--tRNA ligase beta subunit GlyS; Region:COG0751J.
       0.589
APG90737.1
N-acetylglutamate synthase; Region:COG0456J.
  
    0.541
lepB
Signal peptidase I; Region:COG0681U; Belongs to the peptidase S26 family.
  
    0.522
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.479
APG92096.1
Hypothetical protein; Region:COG0456J.
   
    0.452
APG90215.1
AraC-family transcriptional regulator; Region:COG2207K.
       0.418
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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