STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
antAAnthranilate 1,2-dioxygenase large subunit; Region:COG4638PR. (414 aa)    
Predicted Functional Partners:
hcr
NADH oxidoreductase Hcr; Region:COG1018C.
 
 0.998
APG90060.1
Dioxygenase reductase subunit; Region:COG1018C.
  
 0.931
APG91822.1
Dimethylglycine dehydrogenase; Region:COG0404E; Belongs to the GcvT family.
  
 
 0.911
betB
Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
   
 
 0.903
soxD
Sarcosine oxidase subunit delta; Region:COG4311E.
 
    0.860
soxG
Sarcosine oxidase subunit gamma; Region:COG4583E.
 
    0.789
soxA
Sarcosine oxidase subunit alpha; Region:COG0404E.
 
  
 0.787
stcD-2
N-methylproline demethylase StcD; Region:COG0446I.
 
  
 0.758
paaE
Phenylacetic acid degradation NADH oxidoreductase PaaE; Region:COG1018C.
  
  
 0.662
APG89897.1
Erythronolide synthase, modules 3 and 4; Region:COG0236IQ.
  
  
 0.579
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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