STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioMBiotin transporter, ATP binding protein BioM; Region:COG1122PR. (226 aa)    
Predicted Functional Partners:
bioN
Biotin transporter, permease protein BioN; Region:COG0619H.
 
 0.999
bioY
Biotin transporter BioY; Region:COG1268H.
 
 
 0.998
APG90257.1
long-chain-fatty-acid--CoA ligase; Region:COG0318IQ.
 
     0.769
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.697
vraB
acetyl-CoA C-acetyltransferase VraB; Region:COG0183I; Belongs to the thiolase-like superfamily. Thiolase family.
       0.683
APG90261.1
Hypothetical protein; Region:COG3214R.
       0.666
smoK
ATP-binding transport protein SmoK; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
  
 
0.598
ugpC-3
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Region:COG3839G; Belongs to the ABC transporter superfamily.
  
  
 
0.583
aglK-2
Alpha-glucoside transport ATP-binding protein AglK; Region:COG3842E; Belongs to the ABC transporter superfamily.
  
 
 
0.564
malK
ABC transporter, ATP-binding protein,Maltose/maltodextrin import; Region:COG3842E; Belongs to the ABC transporter superfamily.
 
  
 
0.564
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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