Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rimJRibosomal-protein-alanine acetyltransferase RimJ; Region:COG1670JO. (203 aa)    
Predicted Functional Partners:
APG90291.1
Signaling protein; Region:COG2202T.
     
 0.840
APG90293.1
Zinc protease; Region:COG0612R; Belongs to the peptidase M16 family.
  
    0.596
thrC
Threonine synthase ThrC; Region:COG0498E.
       0.581
APG89906.1
Hypothetical protein.
  
     0.568
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.497
APG92787.1
Acetyltransferase; Region:COG1670JO.
  
   
 0.470
murB
UDP-N-acetylenolpyruvoylglucosamine reductase MurB; Cell wall formation.
  
    0.435
APG90481.1
Hydrolase protein; Region:COG1896FR.
 
   
 0.434
APG89793.1
Two component sensor histidine kinase protein; Region:COG4191T.
  
     0.427
APG90296.1
Hypothetical protein.
       0.425
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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