Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG90392.1Hypothetical protein; Region:COG5447S. (115 aa)    
Predicted Functional Partners:
APG90391.1
Peptidoglycan-binding protein; Region:COG3409M.
 
     0.753
APG89756.1
Hypothetical protein; Region:COG5568S.
  
     0.732
APG90856.1
Hypothetical protein.
  
     0.709
APG89867.1
Hypothetical protein.
  
     0.707
APG92406.1
Outer surface protein; Region:COG3637M.
  
     0.672
APG90055.1
Methyl-accepting chemotaxis protein; Region:COG5490S.
  
     0.664
APG91320.1
GTP-binding protein; Region:COG3768S.
  
     0.654
APG92405.1
Heat resistant agglutinin 1 signal peptide protein; Region:COG3637M.
  
     0.652
APG90480.1
Hypothetical protein; Region:COG5350R.
  
     0.642
APG90657.1
Hypothetical protein.
  
     0.640
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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