STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG90443.1Outer membrane protein y4fJ precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (343 aa)    
Predicted Functional Partners:
ropB
Outer membrane protein RopB; Region:COG3637M.
  
 
 0.786
APG91332.1
Kinesin-like protein; Region:COG1196D.
  
     0.774
APG92399.1
Transmembrane protein.
  
     0.773
APG91694.1
Hypothetical protein; Region:COG2982M.
  
     0.771
APG91365.1
Hypothetical protein; Region:COG3184S.
  
     0.766
APG92295.1
Hypothetical protein; Region:COG4093S.
  
     0.765
APG89756.1
Hypothetical protein; Region:COG5568S.
  
     0.753
APG90389.1
Hypothetical protein.
  
     0.752
fliM
Flagellar motor switch protein FliM; Region:COG1868N.
  
   
 0.746
APG90586.1
Transmembrane protein.
  
     0.746
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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