Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rlmJProtein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. (293 aa)    
Predicted Functional Partners:
APG90551.1
Signal peptide protein.
       0.729
APG90550.1
Ribonuclease T2 family protein; Belongs to the RNase T2 family.
       0.653
gst-8
Glutathione S-transferase-like protein; Region:COG0625O.
       0.634
APG90553.1
Oxidoreductase YoaE; Region:COG0243C; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.596
nudK
GDP-mannose pyrophosphatase NudK; Region:COG0494V.
       0.595
mprF
Phosphatidylglycerol lysyltransferase MprF; Region:COG0392S.
       0.412
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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