Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
abfAalpha-N-arabinofuranosidase AbfA; Region:COG3534G. (503 aa)    
Predicted Functional Partners:
APG90576.1
Transcriptional regulator; Region:COG4189K.
 
     0.901
APG90571.1
Extracellular solute-binding protein; Region:COG1653G.
 
  
 0.821
xylA
Xylose isomerase XylA; Region:COG2115G; Belongs to the xylose isomerase family.
    
 0.815
xynB
Beta-xylosidase XynB; Region:COG3507G; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.775
APG91180.1
ABC transporter substrate-binding protein YesO; Region:COG1653G.
 
  
 0.745
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.739
APG91440.1
Beta-mannosidase; Region:COG3250G.
 
   
 0.738
APG91178.1
Hypothetical protein; Region:COG4289S.
 
     0.677
amyD
Starch degradation products transport system permease protein AmyD; Region:COG1175G.
 
    0.656
ugpE-2
Sn-glycerol-3-phosphate transport system permease protein ugpE; Region:COG0395G.
 
  
 0.591
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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