STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG90596.1AraC family transcriptional regulator. (252 aa)    
Predicted Functional Partners:
glxA-3
HTH-type transcriptional regulator GlxA; Region:COG4977K.
 
   0.743
glxA-5
HTH-type transcriptional regulator GlxA; Region:COG4977K.
 
   0.729
APG92593.1
AraC family transcriptional regulator; Region:COG2207K.
 
     0.712
APG91862.1
Hypothetical protein; Region:COG1917R.
  
     0.682
APG92325.1
HTH-type transcriptional regulator YqhC; Region:COG2207K.
  
     0.515
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.446
APG89697.1
AraC family transcriptional regulator; Region:COG2207K.
  
     0.443
APG90593.1
Xanthine dehydrogenase YagR molybdenum-binding subunit YagR; Region:COG1529C.
       0.441
APG90594.1
Hydroxylase molybdopterin-containing subunit; Region:COG1319C.
       0.441
APG90595.1
Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT; Region:COG2080C.
       0.441
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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