STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixJTranscriptional regulatory protein FixJ; Region:COG4566TK. (199 aa)    
Predicted Functional Partners:
fixL
Sensor protein FixL; Region:COG3829KT.
 
 0.996
nodV
Nodulation protein V.
 
 
 0.803
cheR
Chemotaxis protein methyltransferase CheR; Region:COG1352NT.
  
 
 0.748
APG92602.1
Signaling protein; Region:COG3452T.
   
 
 0.557
qseB
Transcriptional regulatory protein QseB; Region:COG0745TK.
  
   
 0.544
fixT
Transcriptional regulator protein FixT.
       0.476
fixK
Nitrogen fixation regulation protein FixK; Region:COG0664T.
 
   
 0.454
pleC
Non-motile and phage-resistance protein PleC; Region:COG0591E.
  
 
 0.431
napB
NapB periplasmic nitrate reductase; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
       0.422
napC
Cytochrome c-type protein NapC; Region:COG3005C.
       0.422
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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