STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJColanic biosynthesis UDP-glucose lipid carrier transferase WcaJ; Region:COG1086MO. (519 aa)    
Predicted Functional Partners:
APG90653.1
Transmembrane succinoglycan biosynthesis transport protein; Region:COG0489D.
 
  
 0.995
APG90652.1
Polysaccharide export-like protein; Region:COG1596M.
 
  
 0.991
APG90649.1
Transmembrane protein; Region:COG3307M-.
 
  
 0.985
APG90651.1
Glycosyl transferase family protein; Region:COG0438M.
 
  
 0.964
APG92266.1
Polysaccharide export-like protein; Region:COG2244M.
 
  
 0.964
ctrA
Capsule polysaccharide export outer membrane protein CtrA; Region:COG1596M.
  
  
 0.953
APG90022.1
Glycosyl transferase family protein; Region:COG0463M.
 
  
 0.942
mrp
ATP-binding Mrp family protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.929
nodL
Nodulation protein L; Region:COG0110R.
  
  
 0.875
APG90655.1
Virginiamycin A acetyltransferase Vat; Region:COG0110R.
  
  
 0.875
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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