Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APG90997.1Hypothetical protein; Region:COG3108S. (441 aa)    
Predicted Functional Partners:
APG90229.1
Hypothetical protein.
  
     0.759
APG90741.1
Acetyltransferase; Region:COG0456J.
  
     0.728
APG92394.1
Hypothetical protein.
  
     0.726
APG90579.1
Transmembrane protein.
  
     0.722
APG90043.1
Hypothetical protein.
  
     0.720
APG92501.1
Outer membrane protein/protective antigen OMA87; Region:COG5338S.
  
     0.715
APG91591.1
Exonuclease III; Region:COG2374R.
  
     0.708
APG91965.1
Transmembrane protein; Region:COG5345S.
  
     0.697
APG90237.1
Glycoside hydrolase family protein; Region:COG3757M.
  
     0.690
APG91694.1
Hypothetical protein; Region:COG2982M.
  
     0.685
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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