STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APG91176.1Hypothetical protein; Region:COG1082G. (256 aa)    
Predicted Functional Partners:
serA
D-3-phosphoglycerate dehydrogenase; Region:COG0111HR; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.910
APG91178.1
Hypothetical protein; Region:COG4289S.
 
     0.866
APG89690.1
Thiamine pyrophosphate domain-containing protein; Region:COG3962G; Belongs to the TPP enzyme family.
 
  
 0.807
purR
HTH-type transcriptional repressor PurR; Region:COG1609K.
  
    0.801
APG91180.1
ABC transporter substrate-binding protein YesO; Region:COG1653G.
 
    0.778
iolB
5-deoxy-glucuronate isomerase IolB; Region:COG3718G.
 
  
 0.742
iolC
5-dehydro-2-deoxygluconokinase IolC; Region:COG0524G.
  
  
 0.667
APG91860.1
Oxidoreductase; Region:COG0667R.
 
  
 0.637
APG91438.1
Oxidoreductase protein; Region:COG0673R.
 
  
 0.626
xylB
Xylulose kinase XylB; Region:COG1070G.
  
 
 0.562
Your Current Organism:
Sinorhizobium americanum
NCBI taxonomy Id: 194963
Other names: ATCC BAA-532, CIP 108390, DSM 15007, Ensifer americanum, Ensifer americanus, Ensifer americanus corrig. (Toledo et al. 2003) Wang et al. 2015, Ensifer sp. AC14c, Ensifer sp. CFNEI 156, S. americanum, Sinorhizobium americanum Toledo et al. 2004, Sinorhizobium americanus, Sinorhizobium sp. CFNEI 156, Sinorhizobium sp. CFNEI 54, strain CFNEI 156
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.